The Toffees, leading 4-0 from the first leg, had Tony Hibbert sent off for a foul on Jakub Petr and Lukas Bajer hit the bar from the resulting free-kick.
French referee Fredy Fautrel was left with no choice but to give Hibbert his marching orders but the punishment ended there for Everton as Bajer's curling set-piece rebounded off the woodwork and was cleared to safety.